Genomics England are looking for a provider to support in digitising all the histopathology slides from the participants of the 100,000 Genomes Project so they can be transferred to the multi-modal research environment.
The multi-modal project provides an enriched data set for cancer research by adding of imaging data from pathology slides and radiology images (e.g., x-ray, CT and MRI) alongside whole genome data.
The multi-modal project aims are:
- Complete the scanning and digitisation of the remaining 200,000 histopathology slides for the 100,000 Genomes Project participants.
- Make accessible to researchers a secure library of linked genomic, clinical and imaging cancer data accompanied with the tooling needed to accelerate the understanding of the morphological, genomic and clinical changes that occur in cancer.
- Lead the research community to generate new insights from the data to support diagnostic, prognostic and precision medicine discovery.
The requirements include the following:
• To provide a high quality, clinical grade digital pathology service.
• The successful supplier must be of reputable standard with known clinical and academic standing and engagement with the Royal Collage of Pathologists (as this is a national digitisation programme).
• Ideally based within an NHS site to allow for receipt of identifiable information from participants and not require formal MTAs for movement of slides.
• Supplier must demonstrate secure storage for identifiable glass slides.
• Deployment team already established to perform similar process, at scale (expected volumes of 4000 slides per week).
• Clear protocol for handling and anonymisation of participant information and slides.
• Anonymise, scan and digitise 200,000 histopathology slides from solid cancer participants in the 100,000 Genomes Project over one year.
• Digitisation of slides must be performed at x40 magnification on Leica GT450 scanner, in line with previous configurations and analysis.
• Supplier will need to provide scanning of selected slides on a variety of scanners for variability.
• Digital images need to be of DICOM compatible format.
• Supplier will need to have logistics in place to digitise from CellNass directly.
• Transfer these digitised slides to the Genomic England's multi-modal research environment over IBM Aspera.
• Capability to receive and store histopathology slides.
• Capability to conduct quality control protocols and scan all slides.
• Capability to store and transfer image data.